Papers
2013:
Groen D, Borgdorff J, Bona-Casas C, Hetherington J, Nash RW, Zasada SJ, Saverchenko I, Mamonski M, Kurowski K, Bernabeu MO, Hoekstra AG, Coveney PV. "Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations", Interface Focus 3: 20120087.
M. O. Bernabeu, R. W. Nash, D. Groen, H. B. Carver, J. Hetherington, T. Krueger and P. V. Coveney. "Impact of blood rheology on wall shear stress in a model of the middle cerebral artery", Interface Focus 3: 20120094.
D. Groen, J. Hetherington, H. B. Carver, R. W. Nash, M. O. Bernabeu, P. V. Coveney. Analyzing and Modeling the Performance of the HemeLB Lattice Boltzmann Environment, accepted by JOCS. http://arxiv.org/abs/1209.3972
Joris Borgdorff, Jean-Luc Falcone, Eric Lorenz, Carles Bona-Casas, Bastien Chopard, Alfons G. Hoekstra. "Foundations of distributed multiscale computing: Formalization, specification, and analysis", Journal of Parallel and Distributed Computing 73 (2013) pp. 465-483
2012:
Hywel B Carver, Derek Groen, James Hetherington, Rupert W Nash, Miguel O Bernabeu, Peter V Coveney. "Coalesced communication: a design pattern for complex parallel scientific software", arXiv preprint arXiv:1210.4400.
Mohamed Ben Belgacem, Bastien Chopard and Andrea Parmigiani. "Coupling Method for Building a Network of Irrigation Canals on a Distributed Computing Environment", Proceedings of the 10th International Conference on Cellular Automata for Research and Industry, ACRI 2012, Santorini Island, Greece, September 24-27, 2012. Springer LNCS 7495.
Andrea Parmigiani, Jonas Latt, Mohamed Ben Belgacem and Bastien Chopard. "A Lattice Boltzmann simulation of the Rhone river", submitted to the International Journal of Modern Physics C.
K. Rycerz, E. Ciepiela, D. Harezlak, T. Gubała, G. Dyk, J. Meizner, M. Bubak, J. Borgdorff, and A. G. Hoekstra. An Environment for Programming and Execution of Multiscale Applications. ACM Transactions on Modeling and Computer Simulation (in review)
K. Rycerz, D. Harężlak, G. Dyk, E. Ciepiela, T. Gubała, J. Meizner, and M. Bubak. Programming and Execution of Multiscale Applications. submitted to Cracow Grid Workshop 2012, 22-24 October 2012, Kraków, Poland
B. Bodziechowski, E. Ciepiela, M. Bubak. Assessment of Software Quality with Static Source Code Analysis: GridSpace2 Case Study. submitted to Cracow Grid Workshop 2012, 22-24 October 2012, Kraków, Poland
D. Groen, S. Zasada, P. Coveney. Survey of Multiscale and Multiphysics Applications and Communities, submitted to CiSE, http://arxiv.org/abs/1208.6444
J. Borgdorff, C. Bona-Casas, M. Mamonski, K. Kurowski, T. Piontek, B. Bosak, K. Rycerz, et al. (2012). A Distributed Multiscale Computation of a Tightly Coupled Model Using the Multiscale Modeling Language. Procedia Computer Science, 9, 596–605. Presented at ICCS 2012. doi:10.1016/j.procs.2012.04.064
S. Zasada, M. Mamonski, D. Groen, J. Borgdorff, I. Saverchenko, T. Piontek, K. Kurowski, P. Coveney, Distributed Infrastructure for Multiscale Computing, accepted by the 16th IEEE/ACM International Symposium on Distributed Simulation and Real Time Applications, October 25-27, 2012, in Dublin, Ireland.
D. Groen, J. Borgdorff, S. Zasada, C. Bona-Casas, J. Hetherington, R. Nash, A. Hoekstra, P. Coveney, A Distributed Infrastructure for Multiscale Biomedical Simulations, Virtual Physiological Human Conference 2012.
J. Suter, D. Groen, L. Kabalan and P. Coveney: Distributed Multiscale Simulations of Clay-Polymer Nanocomposites, Materials Research Symposium, San Francisco, United States of America, April 2012.
2011:
J. Borgdorff, J. Falcone, E. Lorenz, B. Chopard, and A. Hoekstra: A principled approach to Distributed Multiscale Computing, from formalization to execution, In Proceedings of The Seventh IEEE International Conference on e-Science Workshops, Stockholm, Sweden, 5-8 December 2011. IEEE Computer Society, Washington, DC, USA, 97 - 104, 2011. doi:10.1109/eScienceW.2011.9
D. Groen, J. Suter, P. Coveney: Modelling Distributed Multiscale Simulation Performance: An Application to Nanocomposites, In Proceedings of The Seventh IEEE International Conference on e-Science Workshops, Stockholm, Sweden, 5-8 December 2011. IEEE Computer Society, Washington, DC, USA, 105 - 111, 2011. doi:10.1109/eScienceW.2011.37
D. Groen, S. Zasada, P. Coveney: Taxonomy of Multiscale Computing Communities, In Proceedings of The Seventh IEEE International Conference on e-Science Workshops, Stockholm, Sweden, 5-8 December 2011. IEEE Computer Society, Washington, DC, USA, 120 - 127, 2011. doi:10.1109/eScience.2011.11
K. Rycerz and M. Bubak: Building and Running Collaborative Distributed Multiscale Applications. In: W. Dubitzky, K. Kurowsky, B. Schott (Eds) Large-Scale Computing Techniques for Complex System Simulations, Chapter 6, pp. 111-130. J. Wiley and Sons, 2011 http://www.wiley-vch.de/publish/en/books/ISBN978-0-470-59244-1
K. Rycerz, M. Nowak, P. Pierzchala, M. Bubak, E. Ciepiela and D. Harezlak: Comparision of Cloud and Local HPC approach for MUSCLE-based Multiscale Simulations. In Proceedings of The Seventh IEEE International Conference on e-Science Workshops, Stockholm, Sweden, 5-8 December 2011. IEEE Computer Society, Washington, DC, USA, 81-88, 2011. doi:10.1109/eScienceW.2011.21
K. Rycerz, M. Bubak: Component Approach to Distributed Multiscale Simulations. In: Proc. SIMULTECH 2011, 1st International Conference on Simulation, Modeling Technologies and Applications, July 29-31, 2011, Noordwijkerhout, The Netherlands, pp. 122 - 127 (2011)
S. Zasada, D. Groen, P. coveney: Developing an infrastructure to support multiscale modelling and simulation. Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery, Article No. 30, July 17-21, 2011.
K. Rycerz, E. Ciepiela, J. Kocot, M. Nowak, P. Pierzchała, M. Bubak: Towards an Environment for Multiscale Applications, abstract at KUKDM in Zakopane, Poland, 2011